Talks

A highlight of my work is giving presentations.

Science and software is only useful if people know about it. A joy of working in open-souce is the ability to share tools and communities with others. The talks and training that I give are below, with slides and YouTube recordings wherever possible.

2025

AI Engineering in Stockholm Meetup

April 23^rd • Scientific workflows with LLMs and AI agents

SciLifeLab seminar: Automation of research processes with LLMs and AI

March 6^th • Building and testing scientific workflows with LLMs and AI agents

2024

Webinar: A new era for Nextflow

December 10^th • Seqera Webinar with Ben Sherman about new Nextflow VS Code-driven development and syntax enhancements

Webinar: What's new - Autumn 2024

November 20^th • Recap of product announcements from the 2024 Barcelona Nextflow Summit

PyCon Sweden: Rich-click

November 14^th • Accidentally popular: Beautiful CLI interfaces with rich-click

Swedish Bioinformatics Workshop 2024
Keynote

November 5^th • From Bench to Big Data: What's new with MultiQC and Nextflow

Nextflow Summit 2024 Barcelona - MultiQC

October 31^st • MultiQC: New features and flexible data parsing

Nextflow Summit 2024 Barcelona - nf-core Updates

October 31^st • Updates from the nf-core ecosystem

Bytesize: Excalidraw

September 17^th • Intro to Excalidraw — a nifty tool for drawing diagrams.

Bytesize: Explaining Wave containers

June 11^th • Build, upload, and manage container images using Wave

Bytesize: Get your containers with "Nextflow inspect"

May 28^th • Fetch all container URIs from a pipeline in one command

SciLifeLab Data Centre Retreat
Keynote

April 23^rd • Invited speaker for the SciLifeLab DC group retreat

Bytesize: nf-core Special Interest Groups

February 20^th • Introducing a brand new nf-core initiative: Special Interest Groups.

Bytesize: Contributing to Nextflow

February 13^th • Walkthrough of how to contribute code to Nextflow.

2023

Oslo Bioinformatics Workshop Week 2023

December 14^th • Nextflow and nf-core one day training event

Nextflow Summit Boston

November 29^th • Nextflow & nf-core community updates

Bytesize: The Art of a Minimal Example

November 14^th • Part of the nf-core/bytesize series

Nextflow Summit Barcelona - MultiQC

October 20^th • Bringing MultiQC into a new era

Nextflow Summit Barcelona - Community Updates

October 18^th • Nextflow & nf-core community updates

MDC/FMP Retreat 2023

August 28^th • Sponsor and speaker at the 2023 MDC/FMP PhD retreat

BIOMEDAS Retreat 2023
Keynote

June 28^th • Keynote speaker at the BIOMEDAS PhD retreat symposium.

Seqera Webinar: Nextflow best practices

June 21^st • Leveraging nf-core tooling and standards within your organization.

IMN Presentation Skills Workshop

June 16^th • "Visual Aids" training for PhD students and early stage researchers

Bytesize: Python packaging

May 2^nd • Converting Python scripts into packages for PyPI, Bioconda & Biocontainers

Bytesize: nf-core modules patch

March 7^th • nf-core/bytesize talk about the patching functionality to modify shared modules

2022

Genome Web webinar

December 15^th • Experiences with cloud compute in the nf-core open source community

Bytesize: Configuring lint tests

November 29^th • nf-core/bytesize talk about the nf-core lint tests

Bytesize: GitHub via VSCode and CLI

November 29^th • nf-core/bytesize talk showing how to work with GitHub using VSCode and Github CLI

BrazWebinars

November 25^th • A series of webinars on Bioinformatics in Brazil

Open Box Science

November 15^th • A grassroots community organising free online talks and training

NextGenBug 2022
Keynote

October 31^st • Invited keynote speaker to the 2022 NextGen Bioinformatics User Group

Nextflow Summit 2022 - Hackathon report

October 14^th • nf-core hackathon report

Nextflow Summit 2022 - Community updates

October 12^th • Community updates

Bytesize: Community updates

September 27^th • nf-core community updates recap after the core team retreat

Karolinska Institute Seminar

June 20^th • Educational seminar for the Centre for bioinformatics and biostatistics

CRG Nextflow course

June 6^th • BovReg Nextflow workshop organized by the CRG

Bytesize: 2022 Community Survey Results

May 23^rd • Summary of results from the Nextflow and nf-core 2022 community survey

Bytesize: Code linting tools

April 12^th • Short talk about the different linting tools used in nf-core

Bytesize: Customising MultiQC Reports

March 8^th • nf-core/bytesize talk about lesser known MultiQC configuration options

Bytesize: Troubleshooting a failed pipeline

March 1^st • A popular nf-core/bytesize talk about how to debug a failed Nextflow run

2021

Genome Web webinar

December 1^st • Reproducible bioinformatics workflows with Nextflow and nf-core

NBIS Epigenomics course

October 28^th • Nextflow and nf-core

Swedish Bioinformatics Workshop

October 21^st • Reproducible bioinformatics workflows with Nextflow and nf-core

Talks

2025

AI Engineering in Stockholm Meetup

SciLifeLab seminar: Automation of research processes with LLMs and AI

2024

Webinar: A new era for Nextflow

Webinar: What's new - Autumn 2024

PyCon Sweden: Rich-click

Swedish Bioinformatics Workshop 2024 Keynote

Nextflow Summit 2024 Barcelona - MultiQC

Nextflow Summit 2024 Barcelona - nf-core Updates

Bytesize: Excalidraw

Bytesize: Explaining Wave containers

Bytesize: Get your containers with "Nextflow inspect"

SciLifeLab Data Centre Retreat Keynote

Bytesize: nf-core Special Interest Groups

Bytesize: Contributing to Nextflow

2023

Oslo Bioinformatics Workshop Week 2023

Nextflow Summit Boston

Bytesize: The Art of a Minimal Example

Nextflow Summit Barcelona - MultiQC

Nextflow Summit Barcelona - Community Updates

MDC/FMP Retreat 2023

BIOMEDAS Retreat 2023 Keynote

Seqera Webinar: Nextflow best practices

IMN Presentation Skills Workshop

Bytesize: Python packaging

Bytesize: nf-core modules patch

2022

Genome Web webinar

Bytesize: Configuring lint tests

Bytesize: GitHub via VSCode and CLI

BrazWebinars

Open Box Science

NextGenBug 2022 Keynote

Nextflow Summit 2022 - Hackathon report

Nextflow Summit 2022 - Community updates

Bytesize: Community updates

Karolinska Institute Seminar

CRG Nextflow course

Bytesize: 2022 Community Survey Results

Bytesize: Code linting tools

Bytesize: Customising MultiQC Reports

Bytesize: Troubleshooting a failed pipeline

2021

Genome Web webinar

NBIS Epigenomics course

Swedish Bioinformatics Workshop

Swedish Bioinformatics Workshop 2024
Keynote

SciLifeLab Data Centre Retreat
Keynote

BIOMEDAS Retreat 2023
Keynote

NextGenBug 2022
Keynote