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The nf-core framework for community-curated bioinformatics pipelines

Nature Biotechnology (2020)

Ewels PPeltzer AFillinger SPatel HAlneberg JWilm AGarcia MDi Tommaso PNahnsen S

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DOI:10.1038/s41587-020-0439-x

Preprint: an earlier version of this work was posted on bioRxiv as nf-core: Community curated bioinformatics pipelines.

nf-core is a community effort to build and maintain a curated set of bioinformatics analysis pipelines using Nextflow. This paper introduces the framework, describing the guidelines, code templates and tooling that keep nf-core pipelines portable, reproducible and consistent across different compute environments.